Identification of keratinocyte-specific markers using phage display and mass spectrometry
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Identification of keratinocyte-specific markers using phage display and mass spectrometry. / Jensen, Kim Bak; Jensen, Ole Nørregaard; Ravn, Peter; Clark, Brian F C; Kristensen, Peter.
In: Molecular and Cellular Proteomics, Vol. 2, No. 2, 02.2003, p. 61-9.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Identification of keratinocyte-specific markers using phage display and mass spectrometry
AU - Jensen, Kim Bak
AU - Jensen, Ole Nørregaard
AU - Ravn, Peter
AU - Clark, Brian F C
AU - Kristensen, Peter
PY - 2003/2
Y1 - 2003/2
N2 - Specific molecular markers for various normal and pathogenic cell states and cell types provide knowledge of basic biological systems and have a direct application in targeted therapy. We describe a proteomic method based on the combination of new and improved phage display antibody technologies and mass spectrometry that allows identification of cell type-specific protein markers. The most important features of the method are (i) reduction of experimental noise originating from background binding of phage particles and (ii) isolation of affinity binders after a single round of selection, which assures a high diversity of binders. The method demonstrates, for the first time, the ability to detect, identify, and analyze both secreted and membrane-associated extracellular proteins as well as a variety of different cellular structures including proteins and carbohydrates. The optimized phage display method was applied to analysis of human skin keratinocytes resulting in the isolation of a panel of antibodies. Fourteen of these antibodies were further characterized, half of which predominantly recognized keratinocytes in a screen of a range of different cell types. Three cognate keratinocyte antigens were subsequently identified by mass spectrometry as laminin-5, plectin, and fibronectin. The combination of phage display technology with mass spectrometry methods for protein identification is a general and promising approach for proteomic analysis of cell surface complexity.
AB - Specific molecular markers for various normal and pathogenic cell states and cell types provide knowledge of basic biological systems and have a direct application in targeted therapy. We describe a proteomic method based on the combination of new and improved phage display antibody technologies and mass spectrometry that allows identification of cell type-specific protein markers. The most important features of the method are (i) reduction of experimental noise originating from background binding of phage particles and (ii) isolation of affinity binders after a single round of selection, which assures a high diversity of binders. The method demonstrates, for the first time, the ability to detect, identify, and analyze both secreted and membrane-associated extracellular proteins as well as a variety of different cellular structures including proteins and carbohydrates. The optimized phage display method was applied to analysis of human skin keratinocytes resulting in the isolation of a panel of antibodies. Fourteen of these antibodies were further characterized, half of which predominantly recognized keratinocytes in a screen of a range of different cell types. Three cognate keratinocyte antigens were subsequently identified by mass spectrometry as laminin-5, plectin, and fibronectin. The combination of phage display technology with mass spectrometry methods for protein identification is a general and promising approach for proteomic analysis of cell surface complexity.
KW - Antibodies, Monoclonal
KW - Breast/cytology
KW - Cell Line
KW - Cell Line, Tumor
KW - Cells, Cultured
KW - Coliphages/genetics
KW - Epitopes/analysis
KW - Escherichia coli/genetics
KW - Genetic Markers
KW - HeLa Cells
KW - Humans
KW - Intermediate Filament Proteins/genetics
KW - Keratinocytes/physiology
KW - Laminin/genetics
KW - Mass Spectrometry
KW - Peptide Library
KW - Plectin
KW - Sensitivity and Specificity
KW - Skin Physiological Phenomena
KW - Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
U2 - 10.1074/mcp.M200049-MCP200
DO - 10.1074/mcp.M200049-MCP200
M3 - Journal article
C2 - 12644568
VL - 2
SP - 61
EP - 69
JO - Molecular and Cellular Proteomics
JF - Molecular and Cellular Proteomics
SN - 1535-9476
IS - 2
ER -
ID: 200572520